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arXiv preprints from January 1, 2026 through September 10, 2026 — 12:00:45 EST

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Posted in q-bio.NC · 2026-08-12 · Wiga Maulana Baihaqi, Indriana Hidayah, Sri Kusrohmaniah, Noor Akhmad Setiawan

Beyond Local Power: Functional Connectivity Analysis for Subject-Independent Learning Style Recognition

Identifying individual learning styles optimizes pedagogical efficacy. While traditional questionnaires are structured, behavioral tracking methods require prolonged interaction log accumulation. To overcome these temporal constraints, this paper proposes an objective Electroencephalography (EEG) approach evaluating Phase Locking...

💬 0 commentsarXiv:2608.12000v1PDF
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Posted in q-bio.PE · 2026-08-12 · Christian Grilletta, Tommaso Anfodillo, Gaia Pasqualotto, Samir Suweis, Andrea Rinaldo, Amos Maritan, Davide Bernardi

A multiscale theory based on metabolic scaling connects forest dynamics to tree-size distributions

Scaling relations linking species size, abundance, and resource availability are among the most robust empirical regularities in ecology. However, a mechanistic explanation for how these community-level laws emerge from ecological processes remains elusive. Here, we address this gap by developing a minimal spatially explicit dynamical...

💬 0 commentsarXiv:2608.11918v1PDF
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Posted in q-bio.GN · 2026-08-12 · Jacob E. Munro, Mark F. Bennett, Melanie Bahlo

SVPLEX: A Nextflow Pipeline for Cohort-level Structural Variant Calling

SVPLEX is a Nextflow pipeline for cohort-level structural variant detection from short-read whole-genome sequencing data. The pipeline implements six different structural variant callers with different strengths and weaknesses, integrating different levels of evidence for SVs, and generates a merged consensus callset across the...

💬 0 commentsarXiv:2608.11621v1PDF
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Posted in q-bio.NC · 2026-08-11 · Xiaoyang Hu, Mike Angstadt, Shane Storks, Zan Huang, Aman Taxali, Alex Weigard, Richard L. Lewis, Chandra Sripada

Conflict and Congruency Effects in Large Language Models: In-Weight and In-Context Competition in a Verbal Conflict Task

Congruency effects, observed in conflict tasks such as Stroop and flanker tasks, have been investigated for nearly a century in psychology and neuroscience, but their mechanistic basis is not fully understood. We introduce a verbal-only LLM conflict task in which a prompt stem elicits a default same-color completion and an explicit...

💬 0 commentsarXiv:2608.11510v1PDF
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Posted in cs.AI · 2026-08-11 · Kelvin P. Idanwekhai, Enes Kelestemur, Benjamin Strickland, Matthew Hart, Steini Davidsson, Angelos Angelopoulos, Ron Alterovitz, Marcello DeLuca, Alexander Tropsha

A Modular Agentic Framework for Synthetically Constrained Multi-Objective Hit-to-Lead Optimization

Hit-to-lead optimization requires iterative design of hit analogs across competing potency, selectivity, physicochemical, pharmacokinetic, safety, and synthetic constraints. We present SABLE (Synthetically-accessible Agentic Bayesian Ligand Exploration), an open-source framework that employs natural-language orchestration to guide...

💬 0 commentsarXiv:2608.11483v1PDF
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Posted in q-bio.QM · 2026-08-11 · Piotr Jedryszek, Tongmeng Xie, Adam Winnifrith, Alexander Hasson, Weronika Ślesak, George Wicks, Toby Winnifrith, Oliver M. Crook

Probing and steering biology across Boltz-1s trunk-diffusion boundary

AlphaFold3-class structure predictors pair a representational trunk, which processes sequence and context, with a diffusion module, which generates atomic coordinates. How biological information changes as it crosses this architectural boundary remains poorly understood. We analyze per-residue activations from the Pairformer trunk and...

💬 0 commentsarXiv:2608.11475v1PDF
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Posted in q-bio.QM · 2026-08-11 · Vincent Lavelle, Yitan Zhu, Kaitlyn Marlor, Thomas Brettin, Rick Stevens

Large-scale AI-Ready Data for Anti-Cancer Drug Response Modeling

Drug response prediction (DRP) models are an active area of research in pharmacogenomics, with growing potential to accelerate the identification of effective anticancer drugs. However, their predictive performance is often constrained by limited dataset scale and insufficient coverages of cancer and chemical spaces. In addition,...

💬 0 commentsarXiv:2608.11444v1PDF
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Posted in q-bio.NC · 2026-08-11 · Matteo Grasso, Jeremiah Hendren, Giulio Tononi

Consciousness as Intrinsic Structure: Towards a Chemistry of Experience

To be conscious is to have an experience - not a collection of phenomenal atoms, but a structured whole composed of distinctions and the relations that bind them. Integrated Information Theory (IIT) identifies the essential properties of every experience (axioms), formulates them operationally as postulates that a substrate must...

💬 0 commentsarXiv:2608.11398v1PDF
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Posted in q-bio.NC · 2026-08-11 · Alain Destexhe

A class of mean-field models to bridge molecular to brain scales

Predicting how molecular changes affect large-scale brain activity is a difficult task because of the lack of appropriate methods to link scales. In this perspective, we review a class of mean-field models that can integrate biophysical details such as synaptic receptors or membrane ion channels. This leads to a multi-scale modeling...

💬 0 commentsarXiv:2608.11185v1PDF
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Posted in math.DS · 2026-08-11 · Kyle C. Nguyen, Kevin B. Flores

Observable-Reduction-Guided Sparse Regression for Partially Observed Active-Quiescent Systems

Active-quiescent switching occurs in biological populations in which growth is confined to a proliferative active state, while cells may reversibly enter a nonproliferative quiescent state. Experiments often observe only part of this process, through active-state markers, aggregate population measurements, or aggregate data...

💬 0 commentsarXiv:2608.11125v1PDF
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Posted in q-bio.NC · 2026-08-11 · Nils Leutenegger

Evaluation Resolution Confounds Learning-Rule Comparisons in Model-Brain RSA of Early Visual Cortex

Representational similarity analysis (RSA) is increasingly used to ask which learning rules give convolutional networks brain-like representations. Because biologically plausible rules such as feedback alignment, predictive coding and STDP do not scale, studies that include them train small networks on small images (typically 32x32...

💬 0 commentsarXiv:2608.12408v1PDF
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Posted in q-bio.SC · 2026-08-11 · Rebecca M Crossley, Jessica R Crawshaw, Neda K Joniani, Ellen T Kahiya, Lata I Paea, Alys R Clark

The role of estrogen receptor alpha on calcium transport during smooth muscle contractions

Reproductive hormones regulate a wide range of physiological processes throughout the human lifespan. Estrogen, in particular, varies substantially across the menstrual cycle and is widely used in contraceptives and hormone replacement therapies. Despite its physiological importance, few experimental studies and even fewer...

💬 0 commentsarXiv:2608.10931v1PDF
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Posted in q-bio.NC · 2026-08-11 · Simon Geirnaert, Alexander Bertrand, Tom Francart, Jonas Vanthornhout

Modeling and Interpreting Correlations, Null Distributions and Significance Levels in Neural Tracking of Natural Stimuli

Neural tracking - the time-locking of neural responses to continuous stimuli such as speech, music, and video - is widely used to study how the brain processes natural input. Tracking strength is typically quantified as the correlation between the recorded neural response and the stimulus, decoded and/or encoded through data-driven...

💬 0 commentsarXiv:2608.10887v1PDF
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Posted in q-bio.QM · 2026-08-11 · Tatsuaki Tsuruyama

An Information Theory Analysis of Whole Slide Image Pathology AI and Diagnostic Field Selection AI Under Limited Resources

A key issue in using AI for pathology diagnosis is what image information should be given to the AI and how limited analysis resources should be used. This study compares two ways of processing different types of images under limited resources. The first is WSI-AI, in which AI automatically compresses information from the whole slide...

💬 0 commentsarXiv:2608.10846v2PDF
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Posted in math.CO · 2026-08-06 · Yuhao Zhao

A superlogarithmic saving for Oddtown modulo composite numbers

Let $f_{\ell}(n)$ be the largest size of a family $\mathcal{A}\subseteq2^{[n]}$ such that no member has size divisible by $\ell$, while the intersection of every two distinct members has size divisible by $\ell$, and let $ω(\ell)$ denote the number of distinct prime divisors of $\ell$. For any prime power $\ell$, the classical answer...

💬 1 commentsarXiv:2608.05750v1PDF
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Posted in cs.CR · 2026-08-07 · Muhammad Awan, John Collomosse

Soft Redaction of Image Provenance via Zero-Knowledge Proofs

Content provenance standards, such as C2PA, are increasingly used to attach signed records of origin, editing history, and rights to digital images. However, provenance transparency can conflict with privacy -- assertions that strengthen trust in an image may also reveal sensitive information about the creator or capture context. We...

💬 1 commentsarXiv:2608.07063v1PDF
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Posted in eess.SY · 2026-08-05 · Lin Wang, I-Hong Hou

TSDM: A Scheduling Policy for Joint Throughput-AoI Optimization in Multichannel Wireless Networks

Optimizing for both low Age of Information (AoI) and high throughput is critical for remote sensing applications that rely on multichannel wireless networks. However, jointly optimizing these two metrics is an analytically challenging problem, particularly in systems with heterogeneous and unreliable channels. To address this...

💬 1 commentsarXiv:2608.05348v1PDF
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Posted in cs.GT · 2026-08-10 · Max Dupré la Tour

Balanced Fair Division for Three Agents under General Valuations and Laminar Constraints

We study fair allocations of indivisible items under general set valuations. We prove that every instance with three agents and arbitrary real-valued valuations admits a balanced allocation that is envy-free up to one good and one chore (EF$1^c_g$). This directly implies balanced EF$1$ when each valuation is either monotone...

💬 1 commentsarXiv:2608.09437v1PDF
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Posted in astro-ph.SR · 2026-08-06 · Samrat Sen, Alexander G. M. Pietrow, Veronika Jer{\vc}i{ć}, Patrick Antolin

Multi-wavelength synthesis of a flux rope-trapped mini-prominence eruption and post-flare coronal rain

Small-scale eruptive phenomena in the solar corona including miniature flux ropes and associated cool plasma condensations are not fully understood despite increasing high-resolution observations. We perform forward modeling based on a 2.5D MHD simulation capturing homologous flux rope eruptions, in-situ condensation leading to a...

💬 1 commentsarXiv:2608.06478v1PDF
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Posted in astro-ph.CO · 2026-08-10 · Youcai Zhang, Xiaohu Yang, Hong Guo, Peng Wang

Multi-tracer mass bias in matched cosmic voids from SDSS DR7 and the ELUCID constrained simulation

Cosmic voids provide a unique environment for studying the relationship between galaxies, subhaloes, and dark matter in the underdense Universe. Using the SDSS galaxy catalogue and the ELUCID constrained simulation, we establish an observationally anchored framework for measuring multi-tracer mass bias within matched cosmic voids. A...

💬 1 commentsarXiv:2608.09086v1PDF
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Posted in gr-qc · 2026-08-04 · Luis Lehner

Gravitational Enstrophy: Local Geometric Origin and Inverse-Cascade Constraints

Two-dimensional fluids conserve energy and enstrophy, driving inverse energy cascades via Fjørtoft's argument. We show General Relativity admits an analogous structure: for linear radiative perturbations of Petrov type D backgrounds (Kerr, Kerr--AdS), the gravitational-wave energy $W = \sum_k W_k$ and magnetic Weyl enstrophy...

💬 1 commentsarXiv:2608.03697v2PDF
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Posted in eess.SY · 2026-08-13 · Máté Kiss, Roland Tóth, Maarten Schoukens

Robust Space-Filling Input Design via Stochastic Optimization

The space-filling input design approach generates a so-called space-filling dataset in the feature space of the system model. The design method is applicable on a broad class of model structures with wide selection of signals and also incorporates information measures through optimality criteria into the signal design. However, during...

💬 0 commentsarXiv:2608.13360v1PDF
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Posted in eess.SP · 2026-08-13 · Georg Schwan, Alexander Stutz-Tirri, Christoph Studer

A Physically Consistent Assessment of Nearfield Beamfocusing into Occluded Regions

Recent work has explored elaborate beamfocusing techniques for the radiative nearfield, with some studies suggesting that certain beamshapes, such as Airy beams, can enable efficient electromagnetic (EM) wave transmission behind obstacles. In this letter, we ask whether the added complexity of such techniques is justified. We...

💬 0 commentsarXiv:2608.13350v1PDF
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Posted in eess.SP · 2026-08-13 · Alexander Bräuer, Benjamin Cauchi, Nils Strodthoff

Foundation models for movement data: Are they ready for prime-time?

Foundation models (FMs) trained on large-scale accelerometer data have been proposed as general-purpose feature extractors for health monitoring, but systematic evidence of their advantages is lacking. We present the first comprehensive evaluation of four open-source accelerometer FMs against supervised baselines covering 19 tasks...

💬 0 commentsarXiv:2608.13316v1PDF
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Posted in cs.GT · 2026-08-13 · Ahmet Bugra Gundogan, Yigit Turkmen, Melih Bastopcu

Keep, Customize, or Exit: Default Design and Token Pricing in LLM Reasoning Services

We study a large language model (LLM) service in which a provider chooses a per-token price and a default reasoning-token allocation, while a user may accept the default, customize the allocation, or exit. Larger allocations can improve accuracy but increase token cost and latency. We model this interaction as a Stackelberg game and...

💬 0 commentsarXiv:2608.13315v1PDF