arXiv preprints from January 1, 2026 through September 7, 2026 — 20:31:10 EST
Full-length RNAs, particularly messenger RNAs, often exceed the context lengths used to pretrain existing RNA foundation models, limiting complete-transcript modeling at single-nucleotide resolution. We present RIBOSPAN, a 1.61-billion-parameter bidirectional RNA foundation model natively pretrained with context lengths up to 10,240...
Single-particle cryo-electron microscopy (cryo-EM) pose estimation is traditionally solved anew for each dataset, where iterative refinement is done from scratch while the estimator learns to store the molecule in its weights. In this work, we show that pose inference is a generalizable, specimen-agnostic operation when conditioned...
Does multi-agent LLM interaction help or hurt? Some work reports gains from debate (Du et al., 2024), critique loops (Chen et al., 2025), and mixture-of-agents synthesis (Wang et al., 2025), while other work finds that interaction adds cost without improving quality under equal budgets (Tran & Kiela, 2026; Xu et al., 2026; Jarrett et...
The boxicity of a graph $G$, denoted by $box(G)$, is the minimum integer $d\geq 0$ such that $G$ is the intersection graph of axis-parallel boxes in $\mathbb{R}^d$. The class of zero divisor graphs introduced by Beck (1988) is a popular class of graphs and has been studied extensively by several researchers. Suppose $Z(R)$ is the...
The continual evolution of malware variants necessitates detection systems that can adapt to new threats without retraining from scratch. However, continually updating models on new data often leads to catastrophic forgetting, where previously learned knowledge is overwritten. While continual learning has been increasingly explored...
Older adults recovering after lower-limb fracture or hip replacement may experience complex recovery trajectories. Most of the time, these clinical aspects are studied in isolation, masking their joint impact on recovery. This study used the MAISON-LLF dataset, which contains multimodal sensor and clinical assessment data from 18...
World models can predict video without learning dynamics that they reliably preserve. We test whether a frozen DreamerV3 trained only on pendulum video learns a scalar that its own latent transition treats as approximately conserved. A label-free search recovers the same energy-like invariant across independently trained conservative...
Earth-system analysis reconstructs changing physical processes from observations that differ in source, scale, timing, and modality. Natural hazards make this work consequential because incomplete evidence can change estimates of severity, exposure, and mechanism. We introduce EarthVerse, a benchmark that evaluates scientific agents...
Vision-Language Models (VLMs) achieve strong performance in visual reasoning tasks, but it remains unclear whether they understand visual relations, or simply employ shortcuts such as language cues or priors. To investigate this, we use the Qwen3-VL-4B (Bai et al., 2025), a modern VLM, to decode how visual information is encoded...
Earth System Models (ESMs) rely heavily on High-Performance Computing (HPC) resources to simulate global climate. As these models evolve, their computational demands continue to grow, driven by three factors: (1) finer spatial grid resolutions, (2) the integration of complex biogeochemical processes (e.g., atmospheric chemistry,...
Historical people may appear under different languages, scripts, and transcription traditions, while distinct individuals may share highly similar or even identical names. This makes historical identity reconciliation more than a problem of string matching or transliteration. We introduce MHER, a provenance-controlled benchmark for...
Search rankings are valuable because human attention is scarce and sequential. Higher-placed alternatives are easier to find, so they are examined and bought more often. Consumers are now delegating search to AI agents that can ingest an entire results page at once. Randomizing the order of one hundred hotel listings across 5,000 AI...
Consider the problem of designing a revenue-optimal auction mechanism when two heterogeneous items are sold to a single buyer having independent valuations over the items. The distributions of the buyer's valuation for the items are assumed to have densities that are positive, nondecreasing, and continuously differentiable on their...
We prove that minimum Riesz $s$-energy subset selection in the Euclidean plane is NP-complete already for the fixed exponent $s=2$. To our knowledge, this is the first Euclidean hardness result for exact Riesz-energy subset selection in which both the ambient dimension and the exponent are fixed. The reduction uses Barahona's planar...
Systematic trading rests on one article of faith: that regularities found in the past persist. We state it as a time-invariant mechanism driven by an unobserved latent state, and show that it leaves a researcher five constants to declare --- the recurrence bound $Lambda$ at a block length $b$, the invariance defect $epsilon_0$ of the...
Large language models (LLMs) are increasingly used in investment decision-making, yet prior work shows that they exhibit systematic, model-specific investment preferences. We study whether a model's overall investment stance can be calibrated to a specified direction and strength. We introduce an investment-bias dial, an...
Group-based reinforcement learning methods such as GRPO for large language models avoid training a critic by sampling multiple responses for each prompt. A reliable critic could instead estimate token-level advantages from one response, but standard critic-based training recipes are often unstable. We study this instability and...
An interactive world model must follow the user's actions, remember the places it has shown, and stream in real time. The tension is structural: control wants a short horizon, memory wants an unbounded one. ReWorld separates the two during training and bounds them at inference. Mixed per-head attention windows confine most heads to...
Modern software systems accumulate technical debt over decades of development, which makes migration expensive and largely manual. As coding agents become increasingly capable at bug fixing, can they autonomously perform such migrations? Existing benchmarks cannot answer this question because they evaluate only behavioural...
Road traffic injuries remain a major challenge in low- and middle-income countries, where proactive road safety auditing is limited by incomplete crash records, shortages of qualified auditors, and the high cost of large-scale field inspections. To address this problem, we propose Expert-Grounded Distillation (EGD), a novel artificial...
Discrete diffusion models offer a promising alternative to autoregressive generation by enabling parallel updates, but their sampling efficiency can depend strongly on the choice of the forward process and the sampler. For the uniform forward process, existing lower bounds for the standard $τ$-leaping sampler scale linearly with the...
Multi-vector retrieval has become a core primitive in semantic search applications that require fine-grained matching, such as information retrieval, recommender systems and bioinformatics. However, its high computational complexity and memory costs make low-latency retrieval difficult. Prior systems have attempted to optimize query...
Language models are sequential processors, but long-horizon agency requires external information and computation beyond model weights and active context. Prime Agent is an open-source harness for long-horizon evaluation and coding-agent workflows. A persistent IPython REPL follows the Recursive Language Model abstraction for...
Recent advances in continuous diffusion and flow-based language models (LMs) have achieved performance competitive with discrete LMs. However, existing continuous frameworks still rely on decoders supervised with cross entropy (CE) because the flow trajectories are not guaranteed to terminate at valid token embeddings. Motivated by...
In CLAUDE.md, "do not" is a natural-language instruction that the model interprets. Claude Code's deny is a built-in control that blocks an action before the agent can take it. Both can express the same security goal, but they control the agent in different ways. We measure this gap in 481 public CLAUDE.md files. An LLM matched the...